Fixes #309.

Summary

read_file refuses to read outside the granted roots. run_shell does not, so an allowlisted cat returns exactly what the file tool declines to hand over, with no approval prompt:

read_file(path="<secret>/id_rsa")   -> {'error': 'path escapes the workspace'}
cat <secret>/id_rsa                 -> auto-runs, contents returned

Being on the allowlist says the program is safe to run unattended. It says nothing about where it is pointed, and nothing else covers that either: evaluate path-scopes WRITE_LOCAL by inspecting arguments["path"], which the shell has no equivalent of.

This withholds auto-run when an allowlisted command names a path outside every granted root. Withheld, not denied - the command still runs once the user approves it, so a false positive costs one prompt.

Approach

The engine already has the right helper. _under_root resolves a path against every granted root, not just the workspace:

def _under_root(self, path: str) -> bool:
    candidate = self._candidate(path)
    for rp, _ in self._resolved_roots():

rg '_under_root\b' returns one hit - the definition. It has never been called; only _under_writable_root is wired up, for writes. This wires the read side up rather than introducing a parallel notion of confinement.

Same boundary as read_file, and the same one #289 is applying to the browser tools and email_tools already applies to outgoing attachments.

Keeping the false-positive rate at zero

The check only looks at argument tokens that genuinely name a location, which is what keeps ordinary use intact:

• patterns and subcommands are not paths - '*.py', status, install, HEAD~1 are ignored
• a relative path resolves against the workspace, so it stays inside unless it climbs out with ..
• _under_root resolves symlinks, so a link planted in the workspace cannot launder a target outside it
• --file=/etc/passwd is read off the right of the =, rather than skipped as a flag

Escapes covered: /etc/passwd, ~/.ssh/id_rsa, ../../../etc/passwd, head -n 5 /etc/hosts, wc -l /etc/passwd, grep -r AKIA /Users, ls /, pytest --collect-only /tmp/evil_test.py, an absolute path to a directory outside the roots, the in-workspace symlink, and grep --file=/etc/passwd.

Unaffected: ls -la, pwd, git status -s, git log --oneline -5, git diff --stat, grep -n TODO README.md, grep -rn TODO src/, find . -name '*.py', find . -type f -maxdepth 2, cat README.md, cat ./src/app.py, wc -l src/app.py, pytest -q, an absolute path inside the workspace, and reads inside a second granted root.

Scope

Auto-run only. Nothing here changes what the user can approve, what auto mode does, or what happens once a command is in session_allow_commands. The added condition sits on one branch of evaluate and falls through to the existing approval path, so no other decision route changes.

I kept the decision reason generic rather than returning a specific "outside the session directories" string, to keep the diff to one condition. Happy to surface the offending path in the reason if you'd rather the approval card explain itself - it is a two-line change.

Relationship to #307 / #308

Independent, and deliberately on a separate branch off main so they can merge in either order. #308 is about which program may run unattended; this is about where it may be pointed. Different axis, no overlap in the diff.

They do compose: #308 notes that docs/config.example.toml recommends cat, grep, find and ls, and that a trusted workspace can append to allowed_commands. This change is what makes that allowlist safe to hold readers at all.

It also closes the one case I explicitly carved out of #307 as out of scope - pytest /tmp/evil_test.py - because that escape is a path, and this is the axis that can express it.

Test plan

• 21 new cases in tests/test_permissions_risk.py, alongside the existing allowlist tests: reads outside the roots (parametrized over 9 shapes), the symlink case, reads inside the workspace and inside a second granted root (parametrized over 10), and absolute paths inside a root
• pytest tests/test_permissions_risk.py - 51 passed, no existing test modified
• Full suite: 938 passed. The 6 tests/test_fake_slack.py failures and test_bedrock_provider.py are pre-existing on main (missing messaging / bedrock extras, Telegram Connector Issue #257 and setup_dev_env.sh misses the bedrock extra — fresh dev env fails 7 tests out of the box #284) and unrelated.